Basic Information
Locus ID:
evm.TU.LG03.537
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 5507509 | 5513144 | - | evm.TU.LG03.537 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 42,644.40 Da | 60.00 | 74.90 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.73459E-31 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 166 | 215 | 9.46654E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 362 | 397 | 8.9E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 7.9E-19 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 281 | 337 | 7.2E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 175 | 210 | 1.7E-13 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 8.29E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 346 | 404 | 1.88E-14 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 169 | 225 | 5.11E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 278 | 344 | 1.1E-21 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 272 | 337 | 1.1E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.5E-28 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 165 | 215 | 1.3E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 354 | 401 | 3.0E-22 | - |
| SMART | SM00165 | uba_6 | 172 | 212 | 2.1E-4 | IPR015940 |
| SMART | SM00165 | uba_6 | 362 | 399 | 1.1E-8 | IPR015940 |
| SMART | SM00727 | CBM | 279 | 322 | 3.8E-4 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 7.8E-21 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 405 | 1.8E-119 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 359 | 400 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.237774 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 170 | 213 | 12.378214 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 356 | 372 | 2.0E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 388 | 403 | 2.0E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 373 | 387 | 2.0E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 307 | 329 | 2.0E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 156 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_030552222.1 | ubiquitin receptor RAD23c-like [Rhodamnia argentea] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A5C7IGC1 | Ubiquitin receptor RAD23 OS=Acer yangbiense OX=1000413 GN=EZV62_009360 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology