Basic Information
Locus ID:
evm.TU.LG03.473
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 4656989 | 4657471 | + | evm.TU.LG03.473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.30 | 17,602.66 Da | 33.81 | 92.12 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 86 | 148 | 1.61507E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 10 | 70 | 1.5E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 85 | 147 | 7.0E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 3 | 148 | 1.18E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 103 | 2.7E-27 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 104 | 156 | 2.1E-15 | - |
| SMART | SM00054 | efh_1 | 11 | 39 | 0.13 | IPR002048 |
| SMART | SM00054 | efh_1 | 47 | 75 | 2.3 | IPR002048 |
| SMART | SM00054 | efh_1 | 122 | 150 | 7.3E-8 | IPR002048 |
| SMART | SM00054 | efh_1 | 86 | 114 | 0.0012 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 43 | 78 | 9.520128 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 82 | 117 | 14.42972 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 7 | 42 | 12.867577 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 118 | 153 | 13.843916 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 131 | 143 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 95 | 107 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 56 | 68 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 20 | 32 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_034912524.1 | probable calcium-binding protein CML16 [Populus alba] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2MSW9 | Calcium-binding protein CML16 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS415876 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology