Basic Information
Locus ID:
evm.TU.LG03.40
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 343794 | 344717 | + | evm.TU.LG03.40 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.26 | 18,016.14 Da | 35.18 | 96.46 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 84 | 145 | 8.59703E-21 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 83 | 145 | 7.5E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 7 | 68 | 7.0E-12 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 3 | 146 | 1.09E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 153 | 4.4E-44 | - |
| SMART | SM00054 | efh_1 | 44 | 72 | 2.8 | IPR002048 |
| SMART | SM00054 | efh_1 | 8 | 36 | 0.018 | IPR002048 |
| SMART | SM00054 | efh_1 | 84 | 112 | 5.0E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 120 | 148 | 4.3E-8 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 4 | 39 | 14.011288 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 40 | 75 | 9.380651 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 116 | 151 | 14.373928 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 80 | 115 | 14.318138 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 129 | 141 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 53 | 65 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 17 | 29 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 93 | 105 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_021846565.1 | probable calcium-binding protein CML15 [Spinacia oleracea] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QEY9 | Calcium-binding protein CML16 OS=Spinacia oleracea OX=3562 GN=SOVF_186650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology