Basic Information
Locus ID:
evm.TU.LG03.376
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3943761 | 3948556 | - | evm.TU.LG03.376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 79,416.92 Da | 46.91 | 82.49 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05476 | pepsin_A_like_plant | 95 | 405 | 3.16036E-65 | IPR034161 |
| CDD | cd16454 | RING-H2_PA-TM-RING | 519 | 562 | 5.70149E-19 | - |
| Pfam | PF14541 | Xylanase inhibitor C-terminal | 286 | 405 | 6.4E-16 | IPR032799 |
| Pfam | PF13639 | Ring finger domain | 519 | 562 | 1.8E-12 | IPR001841 |
| Pfam | PF14543 | Xylanase inhibitor N-terminal | 95 | 264 | 7.6E-53 | IPR032861 |
| SUPERFAMILY | SSF57850 | RING/U-box | 499 | 568 | 5.3E-20 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 90 | 404 | 6.28E-78 | IPR021109 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 482 | 566 | 5.2E-20 | IPR013083 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 69 | 261 | 2.5E-50 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 262 | 407 | 4.7E-29 | IPR021109 |
| SMART | SM00184 | ring_2 | 520 | 561 | 5.7E-7 | IPR001841 |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 95 | 420 | 38.106476 | IPR033121 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 520 | 562 | 12.489278 | IPR001841 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 110 | 121 | - | IPR001969 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 306 | 317 | - | IPR001969 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 306 | 317 | 6.6E-6 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 101 | 121 | 6.6E-6 | IPR001461 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010682593.2 | aspartic proteinase CDR1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9D7P9 | Peptidase A1 domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology