Basic Information
Locus ID:
evm.TU.LG03.2555
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 47979184 | 47981546 | - | evm.TU.LG03.2555 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 59,835.86 Da | 60.17 | 52.61 | -1.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 387 | 472 | 8.7E-19 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 488 | 519 | 5.4E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 387 | 472 | 8.4E-29 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 327 | - | - |
| Coils | Coil | Coil | 379 | 413 | - | - |
| Coils | Coil | Coil | 425 | 445 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_044482794.1 | uncharacterized protein LOC123209108 [Mangifera indica] | 0 |
| TrEMBL | A0A067GPW3 | PAPA-1 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g009039mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology