Basic Information
Locus ID:
evm.TU.LG03.2526
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 47739229 | 47752097 | + | evm.TU.LG03.2526 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 158,646.94 Da | 54.05 | 74.03 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 207 | 404 | 1.25389E-94 | - |
| Pfam | PF14309 | Domain of unknown function (DUF4378) | 1269 | 1420 | 2.6E-30 | IPR025486 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 215 | 384 | 1.6E-16 | IPR011545 |
| Pfam | PF14383 | DUF761-associated sequence motif | 596 | 625 | 3.1E-16 | IPR032795 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 205 | 396 | 4.53E-35 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 172 | 404 | 5.1E-84 | IPR027417 |
| SMART | SM00487 | ultradead3 | 209 | 412 | 2.1E-25 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 207 | 410 | 4.5E-81 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 221 | 397 | 21.046766 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 336 | 345 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 838 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 839 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 975 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 785 | 934 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_031269437.1 | uncharacterized protein LOC116127922 [Pistacia vera] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2YQ66 | DNA helicase OS=Populus deltoides OX=3696 GN=H0E87_009651 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology