Basic Information
Locus ID:
evm.TU.LG03.2506
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 47538266 | 47548784 | - | evm.TU.LG03.2506 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 84,039.49 Da | 40.12 | 91.88 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 425 | 719 | 7.2931E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 470 | 505 | 6.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 424 | 460 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 509 | 549 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 683 | 719 | 5.9E-6 | IPR001680 |
| Pfam | PF02301 | HORMA domain | 29 | 139 | 3.6E-9 | IPR003511 |
| Pfam | PF00400 | WD domain, G-beta repeat | 641 | 677 | 0.23 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 419 | 719 | 1.21E-63 | IPR036322 |
| SUPERFAMILY | SSF56019 | The spindle assembly checkpoint protein mad2 | 24 | 165 | 1.22E-34 | IPR036570 |
| Gene3D | G3DSA:3.30.900.10 | HORMA domain | 16 | 178 | 8.6E-37 | IPR036570 |
| Gene3D | G3DSA:2.130.10.10 | - | 417 | 720 | 8.1E-67 | IPR015943 |
| SMART | SM00320 | WD40_4 | 421 | 460 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 466 | 505 | 1.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 635 | 677 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 549 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 596 | 631 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 680 | 720 | 3.2E-9 | IPR001680 |
| SMART | SM00668 | ctlh | 259 | 316 | 0.003 | IPR006595 |
| SMART | SM00320 | WD40_4 | 551 | 591 | 8.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 428 | 469 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50815 | HORMA domain profile. | 22 | 217 | 29.391043 | IPR003511 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 687 | 719 | 11.471045 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 428 | 461 | 9.493783 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 687 | 719 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 259 | 316 | 9.263079 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 473 | 509 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 473 | 514 | 14.41838 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_044494104.1 | WD repeat-containing protein WDS homolog [Mangifera indica] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | V4TTZ0 | WD repeat-containing protein 26 OS=Citrus clementina OX=85681 GN=CICLE_v10019514mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology