Basic Information
Locus ID:
evm.TU.LG03.2505
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 47523690 | 47531939 | - | evm.TU.LG03.2505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 124,741.45 Da | 39.62 | 82.58 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 486 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 912 | 945 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 489 | 528 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 332 | 528 | 2.69E-26 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 468 | 1041 | 1.18E-41 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 969 | 1101 | 3.84E-7 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 542 | 662 | 1.8E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 763 | 1097 | 4.9E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 258 | 541 | 6.1E-32 | IPR015943 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.8E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 532 | 575 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 825 | 860 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 488 | 529 | 0.0031 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.8E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 863 | 903 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 906 | 945 | 6.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 439 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 618 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1001 | 1037 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 445 | 486 | 2.5E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 596 | 627 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 913 | 948 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 913 | 954 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.284064 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 452 | 487 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.007684 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 473 | 487 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1131 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_031269556.1 | topless-related protein 3 isoform X2 [Pistacia vera] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067H246 | Topless-related protein 3-like OS=Citrus sinensis OX=2711 GN=CISIN_1g001190mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology