Basic Information
Locus ID:
evm.TU.LG03.2491
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
RPL18
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 47426575 | 47430038 | + | evm.TU.LG03.2491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.23 | 33,032.22 Da | 33.50 | 85.35 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15801 | PMEI-like_1 | 186 | 293 | 2.49761E-40 | - |
| Pfam | PF04043 | Plant invertase/pectin methylesterase inhibitor | 185 | 289 | 1.3E-20 | IPR006501 |
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 2 | 187 | 5.5E-96 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 20 | 139 | 2.49E-27 | IPR036227 |
| SUPERFAMILY | SSF101148 | Plant invertase/pectin methylesterase inhibitor | 185 | 294 | 2.49E-25 | IPR035513 |
| Gene3D | G3DSA:3.100.10.10 | - | 1 | 185 | 1.5E-101 | - |
| Gene3D | G3DSA:1.20.140.40 | Invertase/pectin methylesterase inhibitor family protein | 186 | 295 | 2.9E-27 | IPR035513 |
| SMART | SM00856 | PMEI_2 | 161 | 289 | 3.8E-13 | IPR006501 |
| TIGRFAM | TIGR01614 | PME_inhib: pectinesterase inhibitor domain | 185 | 293 | 1.0E-22 | IPR006501 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05590.1 | ribosomal protein L18. Encodes cytoplasmic ribosomal protein L18. | 0 |
| RefSeq | XP_031252458.1 | 60S ribosomal protein L18-2-like [Pistacia vera] | 0 |
| P42791 | Large ribosomal subunit protein eL18y OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2 | 0 | |
| TrEMBL | A0A067HGY8 | Ribosomal_L18e/L15P domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029841mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology