Basic Information
Locus ID:
evm.TU.LG03.2481
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 57685064 | 57694170 | - | evm.TU.LG03.2481 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 65,223.93 Da | 26.32 | 102.46 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 382 | 1.74333E-25 | - |
| CDD | cd00030 | C2 | 458 | 554 | 9.46314E-29 | - |
| Pfam | PF00168 | C2 domain | 456 | 549 | 3.0E-26 | IPR000008 |
| Pfam | PF00168 | C2 domain | 262 | 382 | 8.9E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 69 | 246 | 3.2E-14 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 455 | 573 | 1.25E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 407 | 8.11E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 439 | 574 | 5.4E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 416 | 2.8E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 457 | 555 | 4.0E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 263 | 379 | 1.3E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 241 | 380 | 20.207836 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 437 | 556 | 22.565601 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 30.495529 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 521 | 529 | 1.5E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 499 | 512 | 1.5E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 473 | 485 | 1.5E-7 | IPR000008 |
| Coils | Coil | Coil | 431 | 451 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021769371.1 | synaptotagmin-5-like isoform X1 [Chenopodium quinoa] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9EDV8 | Synaptotagmin-5 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology