Basic Information
Locus ID:
evm.TU.LG03.2444
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 47001838 | 47006804 | + | evm.TU.LG03.2444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 94,899.40 Da | 58.62 | 52.76 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 382 | 410 | 2.8E-10 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 416 | 443 | 8.2E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 375 | 411 | 1.18E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 413 | 444 | 2.7E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 374 | 412 | 9.0E-17 | - |
| SMART | SM00547 | zf_4 | 384 | 408 | 2.6E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 417 | 441 | 0.052 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 415 | 444 | 9.33716 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 382 | 411 | 10.20666 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 386 | 405 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 419 | 438 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 708 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 815 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 557 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_006433340.1 | uncharacterized protein LOC18040710 isoform X2 [Citrus clementina] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | V4T573 | Zinc finger protein VAR3, chloroplastic OS=Citrus clementina OX=85681 GN=CICLE_v10000263mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology