Basic Information
Locus ID:
evm.TU.LG03.2407
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 46697463 | 46700863 | + | evm.TU.LG03.2407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 65,875.42 Da | 41.06 | 90.69 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 233 | 470 | 5.3E-69 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 54 | 146 | 3.6E-10 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 45 | 146 | 3.61E-14 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 43 | 162 | 3.2E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 56 | 153 | 2.4E-6 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 56 | 129 | 12.412246 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 233 | 495 | 64.820808 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| Coils | Coil | Coil | 534 | 554 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_006471983.2 | root phototropism protein 3-like [Citrus sinensis] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067F8I5 | NPH3 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g008150mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10452, gene_24916 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005926 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g081670 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008631, gene:ENSEOMG00000028674 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009380, CQ.Regalona.r1.4BG0009520 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30085250, pistato.v30086370 |
| Apiaceae | Apium graveolens | 1 | Ag1G00457 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1230 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G2420, Cgl06G1283 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2407 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.628, evm.TU.LG22.1221 |
| Salicaceae | Populus euphratica | 1 | populus_peu15768 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645883 |
| Solanaceae | Solanum chilense | 1 | SOLCI000021300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005985 |