Basic Information
Locus ID:
evm.TU.LG03.2385
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 56019726 | 56026147 | - | evm.TU.LG03.2385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 65,310.71 Da | 54.96 | 91.11 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 266 | 559 | 2.27857E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 351 | 388 | 3.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 346 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 521 | 559 | 7.1E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 480 | 516 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 266 | 300 | 2.1E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 261 | 559 | 5.49E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 258 | 522 | 5.8E-60 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 578 | 2.8E-11 | IPR015943 |
| SMART | SM00668 | ctlh | 97 | 154 | 5.5E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 349 | 388 | 3.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 475 | 517 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 301 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 520 | 560 | 8.0E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 470 | 220.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 303 | 11.471045 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 500 | 526 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 363 | 390 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 310 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 527 | 561 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 527 | 561 | 11.681953 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 97 | 154 | 9.580786 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 64 | 96 | 8.552486 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 314 | 351 | 9.968326 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 355 | 12.847725 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 288 | 302 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 375 | 389 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 504 | 518 | 3.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 288 | 302 | 3.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 547 | 561 | 3.3E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021843614.1 | WD repeat-containing protein 26-like [Spinacia oleracea] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9A2F8 | Transducin family protein / WD-40 repeat family protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology