Basic Information
Locus ID:
evm.TU.LG03.2384
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 56000031 | 56005287 | - | evm.TU.LG03.2384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 64,910.27 Da | 51.02 | 92.00 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 266 | 558 | 5.69816E-49 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 388 | 0.0068 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 558 | 4.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 300 | 9.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 515 | 0.0057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 346 | 0.028 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 260 | 558 | 1.98E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 260 | 522 | 2.7E-56 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 579 | 5.4E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 2.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 470 | 89.0 | IPR001680 |
| SMART | SM00668 | ctlh | 97 | 154 | 3.6E-6 | IPR006595 |
| SMART | SM00320 | WD40_4 | 349 | 388 | 0.0085 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 516 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 301 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 559 | 4.8E-11 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 97 | 154 | 10.455804 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 302 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 355 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 558 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 314 | 351 | 9.572873 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 526 | 558 | 11.523771 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 64 | 96 | 8.881277 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 302 | 11.260138 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 288 | 302 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 288 | 302 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 503 | 517 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 546 | 560 | 2.4E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 585 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021843614.1 | WD repeat-containing protein 26-like [Spinacia oleracea] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9A2F8 | Transducin family protein / WD-40 repeat family protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology