Basic Information
Locus ID:
evm.TU.LG03.2236
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 53832689 | 53845941 | + | evm.TU.LG03.2236 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 114,694.39 Da | 32.03 | 83.58 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 44 | 320 | 2.39148E-175 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 610 | 821 | 7.1E-47 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 362 | 454 | 8.8E-21 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 903 | 1009 | 2.4E-12 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 45 | 357 | 2.5E-95 | IPR000602 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 464 | 1013 | 2.98E-140 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 33 | 358 | 7.41E-109 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 361 | 455 | 1.77E-28 | IPR028995 |
| Gene3D | G3DSA:2.70.98.30 | - | 604 | 869 | 5.4E-93 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 472 | 583 | 1.8E-28 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 44 | 325 | 7.1E-120 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 326 | 403 | 5.7E-32 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 890 | 1016 | 4.3E-35 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 404 | 459 | 2.7E-22 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 362 | 436 | 1.9E-24 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_021736050.1 | probable alpha-mannosidase At5g13980 [Chenopodium quinoa] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZIS1 | Alpha-mannosidase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology