Basic Information
Locus ID:
evm.TU.LG03.2010
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 41973229 | 41977945 | - | evm.TU.LG03.2010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 45,134.41 Da | 45.05 | 76.05 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 343 | 384 | 3.18485E-15 | - |
| Pfam | PF13639 | Ring finger domain | 341 | 384 | 1.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 185 | 1.19E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 335 | 390 | 7.07E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 317 | 390 | 2.7E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 198 | 2.7E-6 | IPR013083 |
| SMART | SM00184 | ring_2 | 343 | 383 | 8.0E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 162 | 209 | 13.0 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 343 | 384 | 12.681067 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13228.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018484426.1 | PREDICTED: RING-H2 finger protein ATL79-like [Raphanus sativus] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J0H3Q2 | RING-type domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_26g0009490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG03.2008, evm.TU.LG03.2010, evm.TU.LG06.893 ... |