Basic Information
Locus ID:
evm.TU.LG03.2008
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
RHC1A
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 41958313 | 41964808 | - | evm.TU.LG03.2008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.44 | 43,044.70 Da | 49.15 | 74.37 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 147 | 188 | 2.36287E-15 | - |
| Pfam | PF13639 | Ring finger domain | 146 | 188 | 7.7E-14 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 314 | 355 | 8.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 300 | 363 | 1.08E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 194 | 4.42E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 193 | 3.7E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 302 | 373 | 3.2E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 147 | 187 | 3.4E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 316 | 356 | 0.014 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 147 | 188 | 12.592549 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 316 | 357 | 10.586141 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_030939578.1 | uncharacterized protein LOC115964401 [Quercus lobata] | 0 |
| Q9SPL2 | E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4RIA1 | RING-type domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_010996 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG03.2008, evm.TU.LG03.2010, evm.TU.LG06.893 ... |