Basic Information
Locus ID:
evm.TU.LG03.1988
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 46767991 | 46774314 | + | evm.TU.LG03.1988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 53,468.99 Da | 44.36 | 96.02 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 101 | 299 | 9.12079E-136 | - |
| CDD | cd18787 | SF2_C_DEAD | 310 | 440 | 2.62916E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 323 | 431 | 8.6E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 122 | 283 | 1.4E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 166 | 451 | 5.22E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 306 | 470 | 1.2E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 87 | 305 | 6.5E-68 | IPR027417 |
| SMART | SM00490 | helicmild6 | 350 | 431 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 116 | 313 | 5.0E-58 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 128 | 298 | 29.723377 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 97 | 125 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 309 | 470 | 25.905235 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 244 | 252 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_009764703.1 | PREDICTED: eukaryotic initiation factor 4A-15 isoform X1 [Nicotiana sylvestris] | 0 |
| Q40468 | Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZH22 | RNA helicase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology