Basic Information
Locus ID:
evm.TU.LG03.1934
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 40950684 | 40953856 | + | evm.TU.LG03.1934 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 50,039.57 Da | 52.64 | 94.29 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 22 | 60 | 7.9E-8 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 90 | 271 | 2.61E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 76 | 4.58E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 61 | 1.1E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 88 | 318 | 1.2E-10 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 20 | 73 | 9.391492 | IPR001810 |
| Coils | Coil | Coil | 357 | 411 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22720.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_024033708.1 | F-box/LRR-repeat protein At3g26922-like [Citrus clementina] | 0 |
| Q9FNI9 | Putative FBD-associated F-box protein At5g22720 OS=Arabidopsis thaliana OX=3702 GN=At5g22720 PE=4 SV=2 | 0 | |
| TrEMBL | A0A5C7IKX4 | F-box domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004982 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025950 |
| Nitrariaceae | Nitraria sibirica | 10 | evm.TU.LG01.220, evm.TU.LG01.266, evm.TU.LG03.1934 ... |