Basic Information
Locus ID:
evm.TU.LG03.1914
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 40736303 | 40740248 | + | evm.TU.LG03.1914 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 37,074.97 Da | 53.07 | 95.38 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 279 | 320 | 3.70171E-16 | - |
| Pfam | PF13639 | Ring finger domain | 277 | 320 | 2.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 271 | 324 | 6.56E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 325 | 1.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 279 | 319 | 2.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 279 | 320 | 12.489278 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54990.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012087208.1 | E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JNH6 | RING-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_20588 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG03.1914, evm.TU.LG05.885, evm.TU.LG05.887 ... |