Basic Information
Locus ID:
evm.TU.LG03.1901
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 43139055 | 43158595 | + | evm.TU.LG03.1901 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 140,306.19 Da | 46.15 | 75.75 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 315 | 443 | 8.63805E-20 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1124 | 1167 | 4.38443E-16 | - |
| CDD | cd12108 | Hr-like | 54 | 180 | 1.64608E-31 | - |
| CDD | cd12108 | Hr-like | 660 | 813 | 4.88085E-29 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 656 | 814 | 3.4E-9 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 996 | 1071 | 2.3E-17 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1172 | 1229 | 1.2E-23 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 313 | 445 | 1.1E-9 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 56 | 182 | 6.8E-12 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1124 | 1170 | 1.26E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1062 | 1117 | 2.35E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 987 | 1052 | 1.31E-15 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 50 | 200 | 4.3E-34 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 312 | 460 | 3.6E-17 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1196 | 1237 | 7.9E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 651 | 884 | 6.5E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1120 | 1169 | 3.4E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 1125 | 1166 | 7.7E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 989 | 1058 | 25.389936 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1061 | 1124 | 29.323681 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1125 | 1167 | 11.176261 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 564 | - | - |
| Coils | Coil | Coil | 321 | 341 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YHY9 | Zinc finger protein BRUTUS OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology