Basic Information
Locus ID:
evm.TU.LG03.1877
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 40165514 | 40166566 | + | evm.TU.LG03.1877 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 38,610.99 Da | 52.43 | 67.31 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 147 | 190 | 3.89458E-18 | - |
| Pfam | PF13639 | Ring finger domain | 147 | 190 | 8.8E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 130 | 196 | 3.28E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 198 | 2.1E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 148 | 189 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 190 | 12.931868 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 266 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006437376.1 | RING-H2 finger protein ATL52 [Citrus clementina] | 0 |
| Q9LF64 | RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1 | 0 | |
| TrEMBL | V4TLB5 | RING-type E3 ubiquitin transferase OS=Citrus clementina OX=85681 GN=CICLE_v10031956mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology