Basic Information
Locus ID:
evm.TU.LG03.1860
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the universal ribosomal protein uS5 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 39901334 | 39909679 | - | evm.TU.LG03.1860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 88,815.61 Da | 42.69 | 78.88 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03719 | Ribosomal protein S5, C-terminal domain | 691 | 758 | 3.4E-23 | IPR005324 |
| Pfam | PF00333 | Ribosomal protein S5, N-terminal domain | 613 | 677 | 2.5E-18 | IPR013810 |
| Pfam | PF00069 | Protein kinase domain | 4 | 162 | 4.9E-38 | IPR000719 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 682 | 760 | 8.6E-20 | IPR020568 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 608 | 678 | 3.66E-16 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 216 | 4.72E-55 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 79 | 3.0E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 163 | 228 | 7.0E-8 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 565 | 674 | 5.8E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 80 | 162 | 8.0E-20 | - |
| Gene3D | G3DSA:3.30.230.10 | - | 678 | 767 | 6.4E-29 | IPR014721 |
| SMART | SM00220 | serkin_6 | 4 | 194 | 5.7E-46 | IPR000719 |
| ProSiteProfiles | PS50881 | S5 double stranded RNA-binding domain profile. | 613 | 676 | 16.063354 | IPR013810 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 4 | 368 | 27.21291 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 10 | 33 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 122 | 134 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 372 | - | - |
| Coils | Coil | Coil | 558 | 578 | - | - |
| Coils | Coil | Coil | 335 | 355 | - | - |
| Coils | Coil | Coil | 583 | 606 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64880.1 | Ribosomal protein S5 family protein. | 0 |
| RefSeq | XP_044467193.1 | uncharacterized protein LOC123197074 [Mangifera indica] | 0 |
| Q6Z8C8 | Cyclin-dependent kinase F-4 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-4 PE=2 SV=1 | 0 | |
| TrEMBL | V4VE22 | S5 DRBM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10031158mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2699 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19431 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000407 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119050 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30695, Sbi_jg58578 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28447 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005002 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55051, Sgl60303 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006253, gene:ENSEOMG00000021417 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0024600, CQ.Regalona.r1.5BG0026050 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30247330 |
| Apiaceae | Apium graveolens | 1 | Ag4G02774 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G011000, COCNU_10G008140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720772 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1759.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G07291 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G64880.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002490m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g19120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g054350.2N |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G1874, Cgl09G1901 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g02390, gene.Cymno10g05340 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0942s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g25480, gene.Thate08g04520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1860 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032381 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08836, Lb5G28779 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3940, BH01.4337, CH01.4570 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0098560, gene-QOZ80_2BG0152030 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019367 |
| Poaceae | Oryza coarctata | 2 | Oco03G000120, Oco04G000150 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g01230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G003000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0200540, Pt_Chr0200544, Pt_Chr0703049 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G010640, Chr0G010950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G902200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG072890, gene_TRIDC7BG068970 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G519600.1, TraesCS7B02G435700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229290_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52299 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14794 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2374, evm.TU.LG14.1543 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g05120, gene.Posoc06g20840 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1720 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3462 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14386 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13957 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.260 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005837 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12769 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16440 |
| Salicaceae | Populus euphratica | 4 | populus_peu16260, populus_peu16261, populus_peu16269 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613856 |
| Solanaceae | Solanum chilense | 1 | SOLCI006089400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004881 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6175 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0058 |
| Zosteraceae | Zostera marina | 1 | Zosma02g23480.v3.1 |