Basic Information
Locus ID:
evm.TU.LG03.1795
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 39003350 | 39014452 | + | evm.TU.LG03.1795 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 125,146.00 Da | 43.89 | 81.66 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 481 | 0.005 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 916 | 950 | 0.0067 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 406 | 961 | 1.65E-45 | IPR011047 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 891 | 1106 | 2.17E-14 | IPR011048 |
| Gene3D | G3DSA:2.130.10.10 | - | 562 | 687 | 1.9E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 981 | 1116 | 6.1E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 743 | 980 | 1.1E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 296 | 561 | 1.1E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 827 | 865 | 58.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 5.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1001 | 1043 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1057 | 1098 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 615 | 10.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 6.4E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 441 | 482 | 8.1E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 334 | 374 | 38.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 959 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 952 | 10.284687 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.059883 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.481615 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 448 | 491 | 9.271977 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1107 | 1136 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_044467221.1 | protein TOPLESS-RELATED PROTEIN 2-like isoform X2 [Mangifera indica] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7GW19 | TOPLESS OS=Acer yangbiense OX=1000413 GN=EZV62_024572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology