Basic Information
Locus ID:
evm.TU.LG03.1628
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 36507077 | 36516424 | - | evm.TU.LG03.1628 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 67,348.74 Da | 52.10 | 58.64 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 146 | 196 | 3.69198E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 215 | 277 | 9.6E-16 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 294 | 342 | 1.7E-9 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 569 | 596 | 3.06E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 215 | 284 | 3.53E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 296 | 344 | 1.58E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 224 | 2.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 229 | 4.2E-19 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 273 | 528 | 2.4E-84 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 567 | 596 | 5.1E-5 | - |
| SMART | SM00647 | ibrneu5 | 290 | 351 | 0.066 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 215 | 277 | 1.1E-24 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 569 | 596 | 8.862888 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 142 | 355 | 51.995361 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 190 | 9.317383 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 326 | 335 | - | IPR017907 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 573 | 592 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_012085811.1 | probable E3 ubiquitin-protein ligase ARI8 [Jatropha curcas] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1Q3CUG8 | RBR-type E3 ubiquitin transferase OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_27250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology