Basic Information
Locus ID:
evm.TU.LG03.1584
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ankyrin repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 29740447 | 29753294 | + | evm.TU.LG03.1584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 98,051.36 Da | 39.09 | 80.79 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13857 | Ankyrin repeats (many copies) | 65 | 110 | 3.5E-6 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 230 | 322 | 5.1E-16 | IPR005162 |
| Pfam | PF10536 | Plant mobile domain | 406 | 635 | 4.9E-17 | IPR019557 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 11 | 179 | 3.07E-20 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 1 | 189 | 2.2E-22 | IPR036770 |
| SMART | SM00248 | ANK_2a | 136 | 168 | 1000.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 68 | 97 | 0.056 | IPR002110 |
| SMART | SM00248 | ANK_2a | 34 | 63 | 74.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 102 | 132 | 0.074 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 102 | 125 | 8.81647 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 102 | 125 | 8.799692 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 68 | 90 | 9.356852 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 68 | 90 | 9.37738 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 852 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14480.1 | Ankyrin repeat family protein. | 0 |
| RefSeq | XP_027123961.1 | uncharacterized protein LOC113740608 [Coffea arabica] | 0 |
| TrEMBL | A0A803L6U9 | PGG domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 40 | evm.TU.LG01.1647, evm.TU.LG01.964, evm.TU.LG01.995 ... |