Basic Information
Locus ID:
evm.TU.LG03.1576
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 35730024 | 35735948 | + | evm.TU.LG03.1576 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 61,965.80 Da | 47.26 | 94.42 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 236 | 528 | 3.50598E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 234 | 270 | 8.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 358 | 0.037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 493 | 528 | 4.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 281 | 316 | 0.0051 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 229 | 528 | 8.37E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 227 | 492 | 2.4E-58 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 493 | 539 | 1.5E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 444 | 486 | 11.0 | IPR001680 |
| SMART | SM00668 | ctlh | 66 | 123 | 0.003 | IPR006595 |
| SMART | SM00320 | WD40_4 | 489 | 529 | 2.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 400 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 358 | 0.027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 316 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 440 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 232 | 271 | 9.5E-8 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 33 | 65 | 8.720222 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 239 | 280 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 325 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 496 | 531 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 73 | 123 | 9.331521 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 496 | 531 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 321 | 11.260138 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 239 | 273 | 10.442869 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 258 | 272 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 345 | 359 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 258 | 272 | 2.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 345 | 359 | 2.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 516 | 530 | 2.8E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_006448496.1 | WD repeat-containing protein 26 homolog isoform X1 [Citrus clementina] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5P576 | Transducin family protein / WD-40 repeat family protein OS=Citrus unshiu OX=55188 GN=CUMW_104940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology