Basic Information
Locus ID:
evm.TU.LG03.1522
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 34607353 | 34618474 | + | evm.TU.LG03.1522 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 139,008.63 Da | 53.15 | 74.42 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 46 | 174 | 1.61659E-33 | - |
| CDD | cd12108 | Hr-like | 655 | 802 | 7.63309E-31 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1114 | 1157 | 5.18832E-16 | - |
| CDD | cd12108 | Hr-like | 303 | 431 | 9.53289E-22 | - |
| Pfam | PF14599 | Zinc-ribbon | 1162 | 1219 | 3.9E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 986 | 1061 | 7.9E-19 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 48 | 176 | 1.1E-10 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 301 | 433 | 4.7E-8 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1114 | 1156 | 9.0E-8 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 651 | 803 | 1.5E-8 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1113 | 1160 | 2.06E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1052 | 1107 | 2.88E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 979 | 1042 | 1.83E-16 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1109 | 1159 | 9.9E-11 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 303 | 449 | 1.5E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 39 | 194 | 8.4E-34 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1186 | 1226 | 6.5E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 648 | 867 | 4.8E-26 | - |
| SMART | SM00184 | ring_2 | 1115 | 1156 | 5.6E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 979 | 1048 | 25.734354 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1051 | 1114 | 29.091991 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1115 | 1157 | 11.618851 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_006468730.1 | zinc finger protein BRUTUS-like isoform X1 [Citrus sinensis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A067GB85 | Zinc finger protein BRUTUS OS=Citrus sinensis OX=2711 GN=CISIN_1g000881mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology