Basic Information
Locus ID:
evm.TU.LG03.1457
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 24663782 | 24672433 | + | evm.TU.LG03.1457 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 88,980.24 Da | 52.05 | 72.61 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 84 | 121 | 8.6E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 381 | 675 | 2.9E-41 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 80 | 123 | 1.08E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 377 | 679 | 1.08E-80 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 373 | 687 | 1.1E-86 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 69 | 125 | 7.9E-13 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 381 | 678 | 47.942627 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 84 | 121 | 12.103909 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 382 | 397 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 777 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 259 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010681055.2 | ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MCI2 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology