Basic Information
Locus ID:
evm.TU.LG03.1403
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 22331173 | 22331898 | + | evm.TU.LG03.1403 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 26,001.81 Da | 53.00 | 60.37 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 29 | 73 | 1.38422E-31 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 30 | 71 | 4.5E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 84 | 6.01E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 85 | 1.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 31 | 71 | 2.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 31 | 72 | 13.551494 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 46 | 55 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 122 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010680923.1 | E3 ubiquitin-protein ligase RNF185 [Beta vulgaris subsp. vulgaris] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CFV0 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology