Basic Information
Locus ID:
evm.TU.LG03.1371
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 30313937 | 30317872 | + | evm.TU.LG03.1371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 42,970.66 Da | 26.86 | 87.05 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 184 | 0.048 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 330 | 359 | 0.054 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 61 | 359 | 1.96E-36 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 52 | 368 | 4.2E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 189 | 227 | 0.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 361 | 0.27 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 130 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 318 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 147 | 185 | 0.04 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 329 | 359 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 202 | 236 | 8.937796 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 50 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_031268785.1 | SEC12-like protein 2 [Pistacia vera] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A5C7HDF9 | ANAPC4_WD40 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019901 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology