Basic Information
Locus ID:
evm.TU.LG03.1366
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 21348588 | 21356900 | - | evm.TU.LG03.1366 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 172,936.94 Da | 33.93 | 104.50 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 292 | 578 | 4.6367E-88 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 602 | 807 | 6.59335E-96 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1213 | 1434 | 1.73946E-121 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 900 | 1190 | 2.34669E-83 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 918 | 1140 | 9.4E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1232 | 1381 | 5.4E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 291 | 557 | 3.6E-20 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 629 | 759 | 4.0E-15 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1207 | 1443 | 7.85E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 285 | 585 | 2.75E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 628 | 820 | 1.33E-47 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 901 | 1197 | 2.49E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 584 | 854 | 4.5E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1198 | 1448 | 4.6E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 264 | 583 | 3.9E-43 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 866 | 1196 | 1.6E-53 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1241 | 1429 | 1.1E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 633 | 807 | 8.1E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1215 | 1450 | 17.213688 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 602 | 830 | 19.728014 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 902 | 1178 | 32.331406 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 294 | 570 | 30.422401 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 732 | 746 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_010682873.2 | putative ABC transporter C family member 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9G4 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_091770 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology