Basic Information
Locus ID:
evm.TU.LG03.1320
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 20293528 | 20294932 | + | evm.TU.LG03.1320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 44,109.76 Da | 38.60 | 70.59 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 347 | 386 | 6.4E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 341 | 391 | 4.71E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 89 | 144 | 3.66E-7 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 153 | 276 | 1.31E-12 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 137 | 288 | 2.2E-18 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 336 | 388 | 3.0E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 344 | 386 | 10.816236 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_010682773.1 | F-box protein At1g67340 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9EBW2 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology