Basic Information
Locus ID:
evm.TU.LG03.128
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1311066 | 1313138 | + | evm.TU.LG03.128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 45,847.10 Da | 45.57 | 76.95 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 19 | 53 | 1.8E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 90 | 2.75E-11 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 82 | 284 | 3.53E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 57 | 6.6E-8 | - |
| SMART | SM00256 | fbox_2 | 19 | 58 | 2.9E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 117 | 332 | 1.4E-17 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 59 | 10.027357 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48060.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_024006236.1 | putative F-box protein At1g47730 [Eutrema salsugineum] | 0 |
| Q9LNF6 | F-box protein At1g48060 OS=Arabidopsis thaliana OX=3702 GN=At1g48060 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6P6TWT3 | putative F-box protein At1g47790 OS=Coffea arabica OX=13443 GN=LOC113705141 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.128, evm.TU.LG03.18 |