Basic Information
Locus ID:
evm.TU.LG03.1253
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 24399917 | 24406120 | - | evm.TU.LG03.1253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 61,351.32 Da | 46.73 | 67.36 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 335 | 359 | 4.0E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 370 | 392 | 3.2E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 291 | 318 | 2.7E-8 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 363 | 398 | 1.94E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 330 | 363 | 3.45E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 284 | 316 | 8.48E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 284 | 319 | 2.8E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 326 | 364 | 3.4E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 365 | 397 | 6.0E-9 | - |
| SMART | SM00547 | zf_4 | 337 | 361 | 4.9E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 293 | 317 | 1.4E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 370 | 394 | 5.0E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 335 | 364 | 9.766264 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 291 | 320 | 9.958232 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 368 | 397 | 9.133901 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 339 | 358 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 295 | 314 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 372 | 391 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 279 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_031271738.1 | zinc finger protein VAR3, chloroplastic-like [Pistacia vera] | 0 |
| TrEMBL | A0A5C7HLA6 | Zinc finger protein VAR3, chloroplastic OS=Acer yangbiense OX=1000413 GN=EZV62_018349 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology