Basic Information
Locus ID:
evm.TU.LG03.1240
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
CMPG1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 22323626 | 22325014 | + | evm.TU.LG03.1240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 51,580.28 Da | 42.45 | 102.53 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 36 | 77 | 1.86661E-21 | - |
| Pfam | PF04564 | U-box domain | 32 | 103 | 7.3E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 157 | 426 | 4.27E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 29 | 106 | 8.39E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 109 | 1.1E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 126 | 442 | 5.0E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 35 | 98 | 1.5E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 31 | 105 | 32.235497 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_031275108.1 | U-box domain-containing protein 21-like [Pistacia vera] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7HJ93 | RING-type E3 ubiquitin transferase OS=Acer yangbiense OX=1000413 GN=EZV62_018410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology