Basic Information
Locus ID:
evm.TU.LG03.1207
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 16804253 | 16810275 | - | evm.TU.LG03.1207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 29,495.99 Da | 50.46 | 87.89 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 70 | 118 | 5.54688E-18 | - |
| Pfam | PF12906 | RING-variant domain | 70 | 117 | 6.5E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 121 | 2.88E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 122 | 3.8E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 69 | 118 | 5.7E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 62 | 124 | 20.425222 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010694496.1 | E3 ubiquitin-protein ligase MARCHF8 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C9A8T9 | RING-CH-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology