Basic Information
Locus ID:
evm.TU.LG03.1190
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 18755708 | 18757932 | + | evm.TU.LG03.1190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 33,621.29 Da | 38.23 | 76.64 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 37 | 99 | 1.0E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 23 | 107 | 1.2E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 31 | 104 | 1.2E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 35 | 104 | 9.3E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 34 | 108 | 11.946341 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 313 | - | - |
| Coils | Coil | Coil | 249 | 269 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021293178.1 | binding partner of ACD11 1 [Herrania umbratica] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J1B1Q0 | binding partner of ACD11 1 OS=Herrania umbratica OX=108875 GN=LOC110423315 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology