Basic Information
Locus ID:
evm.TU.LG03.1043
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13530300 | 13544225 | - | evm.TU.LG03.1043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 88,011.60 Da | 44.31 | 85.64 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 688 | 761 | 5.62188E-47 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 690 | 760 | 4.7E-23 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 675 | 765 | 1.61E-26 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 657 | 765 | 2.1E-37 | - |
| SMART | SM00213 | ubq_7 | 690 | 761 | 2.1E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 688 | 765 | 16.036791 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 138 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32970.1 | 0 | |
| RefSeq | XP_010685034.2 | uncharacterized protein LOC104899528 [Beta vulgaris subsp. vulgaris] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KQ01 | Ion_trans domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36115, jg8048 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5391 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028302 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167850 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg26569, Sbi_jg26572, Sbi_jg33993 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15093 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011898 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73858, Sgl77362 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000042829 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010060, CQ.Regalona.r1.7BG0012200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30014340 |
| Apiaceae | Apium graveolens | 1 | Ag9G02889 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G002660 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710593 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G34001 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022223m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g06090.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g056730.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1968 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2078 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g02720 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g08990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1583 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036443 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23971 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4317, BH02.4348, CH02.4394 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0044460, gene-QOZ80_1BG0094480 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0309850.1, HORVU.MOREX.r3.3HG0309880.1 |
| Poaceae | Oryza coarctata | 1 | Oco01G028430 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g68960.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G381600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600505 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G022750, Chr08G019280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G674200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG060200, gene_TRIDC3BG068020 |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G424200.1, TraesCS3A02G424800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb364650_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11002 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11808, Zma_g9263 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1043, evm.TU.LG12.686 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g05960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1219 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11691 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11231 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.712 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013638 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9830 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19918 |
| Salicaceae | Populus euphratica | 1 | populus_peu30897 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610075 |
| Solanaceae | Solanum chilense | 1 | SOLCI006713200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031518 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13306_chr07_+ |