Basic Information
Locus ID:
evm.TU.LG03.1036
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
LON peptidase N-terminal domain and RING finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13431772 | 13435649 | + | evm.TU.LG03.1036 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 31,271.30 Da | 59.29 | 70.32 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 232 | 269 | 7.46375E-6 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 229 | 273 | 1.8E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 231 | 276 | 1.1E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 207 | 280 | 2.1E-9 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 232 | 270 | 10.084539 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 173 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010685024.2 | E3 ubiquitin-protein ligase RNF34 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C9DZ51 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology