Basic Information
Locus ID:
evm.TU.LG03.1017
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 13107865 | 13110621 | - | evm.TU.LG03.1017 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 28,230.42 Da | 65.73 | 71.11 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 75 | 252 | 1.84697E-99 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 76 | 181 | 7.1E-17 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 78 | 208 | 9.81E-22 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 55 | 252 | 2.0E-71 | - |
| SMART | SM00232 | pad1_6 | 77 | 205 | 4.3E-15 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 78 | 208 | 29.00893 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_006438381.1 | AMSH-like ubiquitin thioesterase 2 isoform X1 [Citrus clementina] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2H5N995 | MPN domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_021720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology