Basic Information
Locus ID:
evm.TU.LG03.1014
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13060656 | 13072663 | + | evm.TU.LG03.1014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 81,140.73 Da | 55.14 | 64.70 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 468 | 744 | 3.51079E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 627 | 662 | 0.007 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 470 | 496 | 0.0025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 711 | 744 | 0.033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 505 | 538 | 3.8E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 2.1E-6 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 469 | 744 | 5.0E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 461 | 594 | 5.1E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 595 | 744 | 2.9E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 458 | 496 | 3.1E-5 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0016 | IPR006594 |
| SMART | SM00320 | WD40_4 | 624 | 662 | 5.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 621 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 665 | 704 | 0.21 | IPR001680 |
| SMART | SM00320 | WD40_4 | 499 | 538 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 706 | 744 | 8.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 542 | 582 | 7.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 506 | 538 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 506 | 538 | 11.207411 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 713 | 744 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 471 | 505 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 713 | 744 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.40982 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 483 | 497 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 369 | - | - |
| Coils | Coil | Coil | 79 | 107 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_019106448.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R1F4 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology