Basic Information
Locus ID:
evm.TU.LG02.912
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 10160674 | 10169597 | + | evm.TU.LG02.912 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 172,370.91 Da | 41.62 | 85.18 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 129 | 172 | 4.34863E-19 | - |
| CDD | cd00590 | RRM_SF | 431 | 489 | 1.92396E-6 | - |
| Pfam | PF13639 | Ring finger domain | 129 | 172 | 1.9E-11 | IPR001841 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 799 | 1374 | 3.4E-177 | IPR007855 |
| SUPERFAMILY | SSF57850 | RING/U-box | 109 | 177 | 1.64E-19 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 430 | 547 | 1.39E-10 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 417 | 517 | 2.5E-8 | IPR012677 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 180 | 3.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 130 | 171 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 130 | 172 | 12.194218 | IPR001841 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 429 | 512 | 10.513687 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 275 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_010678731.2 | RNA-dependent RNA polymerase 2 [Beta vulgaris subsp. vulgaris] | 0 |
| O82504 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RCQ7 | RNA-dependent RNA polymerase OS=Spinacia oleracea OX=3562 GN=SOVF_081360 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology