Basic Information
Locus ID:
evm.TU.LG02.887
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 9863962 | 9865200 | - | evm.TU.LG02.887 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 47,682.75 Da | 47.09 | 93.33 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 59 | 1.7E-8 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 232 | 321 | 1.5E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 67 | 1.7E-10 | IPR036047 |
| SMART | SM00256 | fbox_2 | 21 | 61 | 6.3E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 126 | 341 | 2.8E-27 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 65 | 9.815402 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_021733689.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AS89 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.886, evm.TU.LG02.887, evm.TU.LG09.1089 ... |