Basic Information
Locus ID:
evm.TU.LG02.560
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
heterogeneous nuclear ribonucleoprotein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5742650 | 5759732 | - | evm.TU.LG02.560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 100,782.99 Da | 44.90 | 68.75 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12327 | RRM2_DAZAP1 | 538 | 617 | 2.77553E-47 | IPR034131 |
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 255 | 399 | 4.2E-13 | IPR003653 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 542 | 599 | 4.5E-15 | IPR000504 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 200 | 372 | 2.75E-25 | IPR038765 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 539 | 637 | 4.7E-25 | IPR035979 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 187 | 401 | 1.5E-24 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 537 | 623 | 1.0E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 541 | 613 | 1.3E-23 | IPR000504 |
| ProSiteProfiles | PS50600 | Ubiquitin-like protease family profile. | 192 | 363 | 12.764862 | IPR003653 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 540 | 617 | 17.864565 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 99 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07810.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021846476.1 | heterogeneous nuclear ribonucleoprotein 1-like [Spinacia oleracea] | 0 |
| Q8W034 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QC17 | Heterogeneous nuclear ribonucleoprotein 1 OS=Spinacia oleracea OX=3562 GN=SOVF_196340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1906, jg35630 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12158, gene_5480 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah019092, Ah037002 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g053900, BVRB_4g089880 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18438, Sbi_jg36854, Sbi_jg38021, Sbi_jg6163 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15682, Seu_jg4747 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006206, GOSA_00017375 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl00724, Sgl00847, Sgl04077, Sgl05746, Sgl05801, Sgl09140 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003644, gene:ENSEOMG00000031522 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2BG0001610, CQ.Regalona.r1.3BG0001420 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30140720 |
| Apiaceae | Apium graveolens | 3 | Ag4G00559, Ag5G00755, Ag6G00242 |
| Arecaceae | Cocos nucifera | 1 | scaffold007467G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717170 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.274.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G20771 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G48480.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010584m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g13550.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g023810.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1719 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1895 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g04420 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09920 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.1029, evm.TU.LG10.1061 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014882 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26955 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.2681, AH04.1012, BH04.946, CH04.1098 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0678400, gene-QOZ80_9BG0702040 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0319330.1, HORVU.MOREX.r3.4HG0345600.1 |
| Poaceae | Oryza coarctata | 2 | Oco21G003180, Oco22G003980 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g10780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G140400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103973, Pt_Chr0704214 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G018590, Chr17G010570, Chr31G003450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G170600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3BG065040, gene_TRIDC3BG077270 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G484200.1, TraesCS3B02G531000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb168510_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23314 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17781 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.560, evm.TU.LG03.1160, evm.TU.LG09.2111 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g07460 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60456.20, evm.TU.Scaffold_11_RagTag.1528 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12285 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14230, nbisL1-mrna-2320 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12672 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.6, evm.TU.utg000010l.179 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008571 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2285, nbisL1-mrna-682 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24242 |
| Salicaceae | Populus euphratica | 2 | populus_peu20519, populus_peu28796 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600769, gene-LOC132600771, gene-LOC132623502 |
| Solanaceae | Solanum chilense | 2 | SOLCI001701500, SOLCI005081500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003371, gene-LOC107009041 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.18361_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1158 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15460.v3.1 |