Basic Information
Locus ID:
evm.TU.LG02.445
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 4898874 | 4904675 | - | evm.TU.LG02.445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 42,568.28 Da | 53.69 | 77.60 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 352 | 394 | 1.48526E-24 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 156 | 205 | 1.0155E-30 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.20361E-30 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.0E-17 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 356 | 391 | 1.5E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 162 | 200 | 1.4E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 275 | 330 | 2.1E-22 | IPR015360 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 85 | 4.05E-21 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 272 | 337 | 2.22E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 159 | 214 | 3.06E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 337 | 398 | 1.49E-14 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 155 | 205 | 2.0E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 348 | 395 | 1.4E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.5E-27 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 266 | 331 | 3.2E-27 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.2E-19 | IPR000626 |
| SMART | SM00165 | uba_6 | 356 | 393 | 2.8E-9 | IPR015940 |
| SMART | SM00165 | uba_6 | 162 | 202 | 8.4E-6 | IPR015940 |
| SMART | SM00727 | CBM | 273 | 316 | 3.6E-6 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 399 | 1.1E-115 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 160 | 203 | 12.281826 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 17.844149 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 353 | 394 | 14.860215 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 350 | 366 | 3.5E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 301 | 323 | 3.5E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 382 | 397 | 3.5E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 367 | 381 | 3.5E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 97 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_044468502.1 | ubiquitin receptor RAD23c isoform X2 [Mangifera indica] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A067EV04 | Ubiquitin receptor RAD23 OS=Citrus sinensis OX=2711 GN=CISIN_1g014118mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology