Basic Information
Locus ID:
evm.TU.LG02.327
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Chromatin structure-remodeling complex subunit RSC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3229412 | 3236919 | - | evm.TU.LG02.327 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 24,788.59 Da | 56.18 | 49.17 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 141 | 189 | 1.0E-9 | IPR019787 |
| Pfam | PF01426 | BAH domain | 22 | 136 | 3.1E-23 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 131 | 194 | 7.97E-19 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 135 | 1.8E-33 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 201 | 4.5E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 141 | 188 | 3.4E-8 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 137 | 2.6E-42 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 137 | 24.636326 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 139 | 190 | 8.9293 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 142 | 187 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 216 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_052194328.1 | chromatin remodeling protein SHL-like isoform X2 [Diospyros lotus] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9H3L3 | [histone H3]-lysine-36 demethylase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15301 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology