Basic Information
Locus ID:
evm.TU.LG02.2837
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 48891875 | 48896947 | - | evm.TU.LG02.2837 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 80,083.45 Da | 52.09 | 81.43 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 27 | 227 | 2.74223E-104 | - |
| CDD | cd18794 | SF2_C_RecQ | 228 | 356 | 2.94959E-58 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 42 | 208 | 4.1E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 359 | 431 | 1.6E-10 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 257 | 345 | 2.9E-10 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 78 | 367 | 3.56E-47 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 7 | 227 | 2.3E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 228 | 449 | 7.0E-57 | IPR027417 |
| SMART | SM00487 | ultradead3 | 34 | 236 | 4.9E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 271 | 347 | 1.0E-15 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 28 | 442 | 7.7E-132 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 46 | 220 | 23.379391 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 247 | 391 | 11.753779 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 720 | - | - |
| Coils | Coil | Coil | 553 | 573 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_031287376.1 | ATP-dependent DNA helicase Q-like 3 [Pistacia vera] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HS21 | ATP-dependent DNA helicase OS=Acer yangbiense OX=1000413 GN=EZV62_014446 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology