Basic Information
Locus ID:
evm.TU.LG02.2776
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 48350352 | 48355642 | + | evm.TU.LG02.2776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 32,001.81 Da | 27.10 | 90.38 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 12 | 157 | 8.36114E-42 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 228 | 271 | 5.11343E-20 | - |
| Pfam | PF13639 | Ring finger domain | 228 | 271 | 5.4E-10 | IPR001841 |
| Pfam | PF02225 | PA domain | 59 | 136 | 7.5E-9 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 222 | 277 | 9.84E-17 | - |
| SUPERFAMILY | SSF52025 | PA domain | 78 | 127 | 2.35E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 277 | 4.5E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 22 | 149 | 1.2E-23 | - |
| SMART | SM00184 | ring_2 | 229 | 270 | 3.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 229 | 271 | 12.577796 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.1 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_021908190.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Carica papaya] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067LHG6 | RING-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_06571 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology