Basic Information
Locus ID:
evm.TU.LG02.2740
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 57723248 | 57731439 | - | evm.TU.LG02.2740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 55,228.76 Da | 60.55 | 81.21 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 267 | 315 | 2.53397E-15 | - |
| Pfam | PF12906 | RING-variant domain | 267 | 314 | 4.0E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 263 | 318 | 6.99E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 253 | 323 | 2.1E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 266 | 315 | 7.8E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 259 | 321 | 19.203537 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010689560.2 | uncharacterized protein LOC104903248 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C8ZBB7 | RING-CH-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology